Super Enhancer Details

General details

Super-Enhancer ID:	SE_00293
Genomic locus:	chr9:101610477-101686521
Size/Length:	76044 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001855
Gene Symbol:	COL15A1
Chromosome:	chr9
TSS:	101705994 (Transcription start site)
TES:	101833074 (Transcription end site)
Strand:	+
Number of Exons:	42
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:101610477-101686521
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00293

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005958	SE_00293	chr9	101610477	101612052	1575	151.58
C005959	SE_00293	chr9	101622971	101630937	7966	3100
C005960	SE_00293	chr9	101635096	101636990	1894	287.09
C005961	SE_00293	chr9	101640767	101647511	6744	1193.31
C005962	SE_00293	chr9	101647514	101652650	5136	2210.66
C005963	SE_00293	chr9	101656020	101658481	2461	465.65
C005964	SE_00293	chr9	101668076	101676537	8461	3100
C005965	SE_00293	chr9	101678584	101683339	4755	885.64
C005966	SE_00293	chr9	101684788	101686521	1733	193.31