Super Enhancer Details

General details

Super-Enhancer ID:	SE_00295
Genomic locus:	chr2:65282542-65359662
Size/Length:	77120 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_015543
Gene Symbol:	RAB1A
Chromosome:	chr2
TSS:	65313987 (Transcription start site)
TES:	65357435 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00295

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003320	SE_00295	chr2	65282542	65289497	6955	1620.14
C003321	SE_00295	chr2	65289879	65293750	3871	1439.21
C003322	SE_00295	chr2	65294777	65298905	4128	945.71
C003323	SE_00295	chr2	65302403	65303885	1482	151.77
C003324	SE_00295	chr2	65308758	65310420	1662	243.83
C003325	SE_00295	chr2	65319726	65321128	1402	126.29
C003326	SE_00295	chr2	65323284	65329363	6079	464.17
C003327	SE_00295	chr2	65338987	65340526	1539	194.79
C003328	SE_00295	chr2	65347576	65349261	1685	197.35
C003329	SE_00295	chr2	65350557	65359662	9105	3100