Super Enhancer Details

General details

Super-Enhancer ID:	SE_00296
Genomic locus:	chr2:43437036-43505371
Size/Length:	68335 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_027251
Gene Symbol:	LINC01126
Chromosome:	chr2
TSS:	43454349 (Transcription start site)
TES:	43455994 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00296

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003194	SE_00296	chr2	43437036	43438790	1754	229.67
C003195	SE_00296	chr2	43444746	43456959	12213	3100
C003196	SE_00296	chr2	43466337	43468577	2240	265.16
C003197	SE_00296	chr2	43477765	43479533	1768	626.22
C003198	SE_00296	chr2	43491399	43498453	7054	2990.02
C003199	SE_00296	chr2	43500475	43502104	1629	145.84
C003200	SE_00296	chr2	43502688	43505371	2683	1083.17