Super Enhancer Details

General details

Super-Enhancer ID:	SE_00297
Genomic locus:	chr18:46448577-46484802
Size/Length:	36225 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001190823
Gene Symbol:	SMAD7
Chromosome:	chr18
TSS:	46446222 (Transcription start site)
TES:	46477081 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr18:46448577-46484802
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00297

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002853	SE_00297	chr18	46448577	46450583	2006	373.79
C002854	SE_00297	chr18	46450614	46453330	2716	1579.12
C002855	SE_00297	chr18	46453448	46463365	9917	3100
C002856	SE_00297	chr18	46463595	46484802	21207	3100