Super Enhancer Details

General details

Super-Enhancer ID:	SE_00300
Genomic locus:	chr17:76856123-76931861
Size/Length:	75738 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003255
Gene Symbol:	TIMP2
Chromosome:	chr17
TSS:	76849058 (Transcription start site)
TES:	76921472 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00300

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002777	SE_00300	chr17	76856123	76860497	4374	1977.95
C002778	SE_00300	chr17	76869162	76870922	1760	346.93
C002779	SE_00300	chr17	76870964	76872566	1602	214.39
C002780	SE_00300	chr17	76874498	76881881	7383	3100
C002781	SE_00300	chr17	76890499	76895075	4576	1427.95
C002782	SE_00300	chr17	76903871	76906269	2398	198.23
C002783	SE_00300	chr17	76907823	76909377	1554	220.65
C002784	SE_00300	chr17	76910941	76921204	10263	1907.06
C002785	SE_00300	chr17	76921369	76922921	1552	1031.17
C002786	SE_00300	chr17	76929056	76931861	2805	1102.27