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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00304
Genomic locus: chr12:69260245-69355420
Size/Length: 95175 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001005502
Gene Symbol: CPM
Chromosome: chr12
TSS: 69244955 (Transcription start site)
TES: 69326979 (Transcription end site)
Strand: -
Number of Exons: 9
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00304

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001683 SE_00304 chr12 69260245 69262285 2040 266.69
C001684 SE_00304 chr12 69269633 69271636 2003 419.19
C001685 SE_00304 chr12 69278798 69283302 4504 1043.85
C001686 SE_00304 chr12 69283627 69285846 2219 729.81
C001687 SE_00304 chr12 69289742 69294249 4507 560.75
C001688 SE_00304 chr12 69295454 69297997 2543 143.47
C001689 SE_00304 chr12 69304560 69315112 10552 1499.98
C001690 SE_00304 chr12 69315510 69317454 1944 227.24
C001691 SE_00304 chr12 69317901 69319316 1415 101.99
C001692 SE_00304 chr12 69323672 69328247 4575 806.59
C001693 SE_00304 chr12 69329169 69332864 3695 1668.6
C001694 SE_00304 chr12 69333418 69337020 3602 420.01
C001695 SE_00304 chr12 69344069 69351767 7698 1498.82
C001696 SE_00304 chr12 69351855 69355420 3565 1967.22