Super Enhancer Details

General details

Super-Enhancer ID:	SE_00304
Genomic locus:	chr12:69260245-69355420
Size/Length:	95175 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001005502
Gene Symbol:	CPM
Chromosome:	chr12
TSS:	69244955 (Transcription start site)
TES:	69326979 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00304

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001683	SE_00304	chr12	69260245	69262285	2040	266.69
C001684	SE_00304	chr12	69269633	69271636	2003	419.19
C001685	SE_00304	chr12	69278798	69283302	4504	1043.85
C001686	SE_00304	chr12	69283627	69285846	2219	729.81
C001687	SE_00304	chr12	69289742	69294249	4507	560.75
C001688	SE_00304	chr12	69295454	69297997	2543	143.47
C001689	SE_00304	chr12	69304560	69315112	10552	1499.98
C001690	SE_00304	chr12	69315510	69317454	1944	227.24
C001691	SE_00304	chr12	69317901	69319316	1415	101.99
C001692	SE_00304	chr12	69323672	69328247	4575	806.59
C001693	SE_00304	chr12	69329169	69332864	3695	1668.6
C001694	SE_00304	chr12	69333418	69337020	3602	420.01
C001695	SE_00304	chr12	69344069	69351767	7698	1498.82
C001696	SE_00304	chr12	69351855	69355420	3565	1967.22