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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00305
Genomic locus: chr7:130644228-130762535
Size/Length: 118307 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NR_024153
Gene Symbol: LINC-PINT
Chromosome: chr7
TSS: 130565750 (Transcription start site)
TES: 130598069 (Transcription end site)
Strand: -
Number of Exons: 4
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00305

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005531 SE_00305 chr7 130644228 130646924 2696 475.96
C005532 SE_00305 chr7 130654653 130656294 1641 135.8
C005533 SE_00305 chr7 130663326 130665084 1758 145.36
C005534 SE_00305 chr7 130666688 130668104 1416 125
C005535 SE_00305 chr7 130669107 130674929 5822 619.63
C005536 SE_00305 chr7 130678459 130682455 3996 805.61
C005537 SE_00305 chr7 130683355 130685532 2177 259.28
C005538 SE_00305 chr7 130691512 130699299 7787 3100
C005539 SE_00305 chr7 130710434 130713182 2748 318.32
C005540 SE_00305 chr7 130718663 130719835 1172 105.17
C005541 SE_00305 chr7 130722692 130725943 3251 374.81
C005542 SE_00305 chr7 130731349 130734758 3409 363.71
C005543 SE_00305 chr7 130740698 130743122 2424 375.1
C005544 SE_00305 chr7 130744705 130746699 1994 113.67
C005545 SE_00305 chr7 130750962 130758771 7809 2560.01
C005546 SE_00305 chr7 130760084 130762535 2451 215.4