Super Enhancer Details

General details

Super-Enhancer ID:	SE_00307
Genomic locus:	chr9:73003809-73037577
Size/Length:	33768 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001206
Gene Symbol:	KLF9
Chromosome:	chr9
TSS:	72999512 (Transcription start site)
TES:	73029573 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:73003809-73037577
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00307

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005942	SE_00307	chr9	73003809	73006737	2928	219.81
C005943	SE_00307	chr9	73016708	73023964	7256	3100
C005944	SE_00307	chr9	73024084	73037577	13493	3100