Super Enhancer Details

General details

Super-Enhancer ID:	SE_00309
Genomic locus:	chr2:10110363-10193909
Size/Length:	83546 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001177718
Gene Symbol:	KLF11
Chromosome:	chr2
TSS:	10184371 (Transcription start site)
TES:	10194963 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00309

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003094	SE_00309	chr2	10110363	10111293	930	106.32
C003095	SE_00309	chr2	10122014	10126679	4665	1195.13
C003096	SE_00309	chr2	10130628	10134344	3716	578.31
C003097	SE_00309	chr2	10141746	10145883	4137	2237.39
C003098	SE_00309	chr2	10146569	10151159	4590	3100
C003099	SE_00309	chr2	10156361	10160432	4071	1678.57
C003100	SE_00309	chr2	10167051	10170378	3327	1022.12
C003101	SE_00309	chr2	10174740	10190244	15504	1270.84
C003102	SE_00309	chr2	10192683	10193909	1226	100.9