Super Enhancer Details

General details

Super-Enhancer ID:	SE_00310
Genomic locus:	chr15:64261927-64322360
Size/Length:	60433 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_014326
Gene Symbol:	DAPK2
Chromosome:	chr15
TSS:	64199234 (Transcription start site)
TES:	64338521 (Transcription end site)
Strand:	-
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00310

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002285	SE_00310	chr15	64261927	64267807	5880	1984.62
C002286	SE_00310	chr15	64274501	64281033	6532	3100
C002287	SE_00310	chr15	64281976	64287172	5196	1275.05
C002288	SE_00310	chr15	64289625	64292394	2769	480.63
C002289	SE_00310	chr15	64296202	64303454	7252	1123.55
C002290	SE_00310	chr15	64304771	64314823	10052	2280.88
C002291	SE_00310	chr15	64316069	64317873	1804	437.58
C002292	SE_00310	chr15	64318578	64322360	3782	1516.76