Super Enhancer Details

General details

Super-Enhancer ID:	SE_00311
Genomic locus:	chr5:149864150-149904308
Size/Length:	40158 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001543
Gene Symbol:	NDST1
Chromosome:	chr5
TSS:	149887673 (Transcription start site)
TES:	149937773 (Transcription end site)
Strand:	+
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00311

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004903	SE_00311	chr5	149864150	149872849	8699	3100
C004904	SE_00311	chr5	149874965	149885594	10629	3100
C004905	SE_00311	chr5	149885681	149889171	3490	751.3
C004906	SE_00311	chr5	149889467	149899312	9845	3001.05
C004907	SE_00311	chr5	149901586	149904308	2722	286.18