Super Enhancer Details

General details

Super-Enhancer ID:	SE_00312
Genomic locus:	chr3:30496390-30591982
Size/Length:	95592 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001024847
Gene Symbol:	TGFBR2
Chromosome:	chr3
TSS:	30647993 (Transcription start site)
TES:	30735633 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00312

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004048	SE_00312	chr3	30496390	30501406	5016	2689.04
C004049	SE_00312	chr3	30511352	30522561	11209	3100
C004050	SE_00312	chr3	30526991	30528730	1739	221.33
C004051	SE_00312	chr3	30533250	30539488	6238	3100
C004052	SE_00312	chr3	30539556	30541253	1697	118.35
C004053	SE_00312	chr3	30552651	30556043	3392	1275.42
C004054	SE_00312	chr3	30558562	30565246	6684	1168.55
C004055	SE_00312	chr3	30576753	30578143	1390	290.55
C004056	SE_00312	chr3	30579594	30581072	1478	136.73
C004057	SE_00312	chr3	30585275	30587522	2247	137.41
C004058	SE_00312	chr3	30589800	30591982	2182	321.48