Super Enhancer Details

General details

Super-Enhancer ID:	SE_00313
Genomic locus:	chr12:111834286-111889811
Size/Length:	55525 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005475
Gene Symbol:	SH2B3
Chromosome:	chr12
TSS:	111843751 (Transcription start site)
TES:	111889427 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00313

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001774	SE_00313	chr12	111834286	111837931	3645	971.91
C001775	SE_00313	chr12	111840072	111852138	12066	3100
C001776	SE_00313	chr12	111862498	111864730	2232	344.35
C001777	SE_00313	chr12	111864961	111876909	11948	2824.39
C001778	SE_00313	chr12	111877184	111889811	12627	2954.33