Super Enhancer Details

General details

Super-Enhancer ID:	SE_00314
Genomic locus:	chr7:130565363-130631230
Size/Length:	65867 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_034120
Gene Symbol:	LINC-PINT
Chromosome:	chr7
TSS:	130565750 (Transcription start site)
TES:	130598069 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr7:130565363-130631230
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00314

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005522	SE_00314	chr7	130565363	130566534	1171	110.69
C005523	SE_00314	chr7	130570659	130574241	3582	606.19
C005524	SE_00314	chr7	130574598	130577208	2610	2918.83
C005525	SE_00314	chr7	130577238	130583258	6020	2218.2
C005526	SE_00314	chr7	130585244	130590497	5253	1123.52
C005527	SE_00314	chr7	130593805	130602453	8648	3100
C005528	SE_00314	chr7	130602534	130608072	5538	561.41
C005529	SE_00314	chr7	130614647	130616785	2138	352.4
C005530	SE_00314	chr7	130623706	130631230	7524	2489.61