Super Enhancer Details

General details

Super-Enhancer ID:	SE_00316
Genomic locus:	chr6:112317314-112365751
Size/Length:	48437 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001033564
Gene Symbol:	FAM229B
Chromosome:	chr6
TSS:	112408673 (Transcription start site)
TES:	112423993 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00316

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005194	SE_00316	chr6	112317314	112320460	3146	1983.14
C005195	SE_00316	chr6	112323793	112326840	3047	324.42
C005196	SE_00316	chr6	112327137	112329464	2327	134.52
C005197	SE_00316	chr6	112334757	112342344	7587	3100
C005198	SE_00316	chr6	112349722	112361365	11643	3100
C005199	SE_00316	chr6	112362400	112365751	3351	2704.24