Super Enhancer Details

General details

Super-Enhancer ID:	SE_00318
Genomic locus:	chr2:238578386-238654070
Size/Length:	75684 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001137551
Gene Symbol:	LRRFIP1
Chromosome:	chr2
TSS:	238600806 (Transcription start site)
TES:	238674558 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:238578386-238654070
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00318

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003625	SE_00318	chr2	238578386	238579773	1387	186.34
C003626	SE_00318	chr2	238581431	238588444	7013	3100
C003627	SE_00318	chr2	238595229	238600702	5473	2643.46
C003628	SE_00318	chr2	238600855	238607781	6926	3100
C003629	SE_00318	chr2	238608341	238613202	4861	1665.62
C003630	SE_00318	chr2	238614544	238615875	1331	165.88
C003631	SE_00318	chr2	238615894	238617293	1399	94.92
C003632	SE_00318	chr2	238623753	238625059	1306	96.75
C003633	SE_00318	chr2	238626328	238627317	989	99.84
C003634	SE_00318	chr2	238633345	238634901	1556	164.51
C003635	SE_00318	chr2	238635051	238637153	2102	205.11
C003636	SE_00318	chr2	238637544	238647960	10416	1631.69
C003637	SE_00318	chr2	238651576	238654070	2494	322.23