Super Enhancer Details

General details

Super-Enhancer ID:	SE_00320
Genomic locus:	chr2:39333685-39390131
Size/Length:	56446 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005633
Gene Symbol:	SOS1
Chromosome:	chr2
TSS:	39208689 (Transcription start site)
TES:	39347604 (Transcription end site)
Strand:	-
Number of Exons:	23
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00320

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003155	SE_00320	chr2	39333685	39335364	1679	121.58
C003156	SE_00320	chr2	39342060	39344039	1979	187.77
C003157	SE_00320	chr2	39344206	39357369	13163	3100
C003158	SE_00320	chr2	39366372	39371788	5416	1359.83
C003159	SE_00320	chr2	39377513	39390131	12618	3100