Super Enhancer Details

General details

Super-Enhancer ID:	SE_00321
Genomic locus:	chr19:30152166-30207801
Size/Length:	55635 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_024310
Gene Symbol:	PLEKHF1
Chromosome:	chr19
TSS:	30156326 (Transcription start site)
TES:	30166383 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00321

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002998	SE_00321	chr19	30152166	30155098	2932	1024.91
C002999	SE_00321	chr19	30155636	30159625	3989	1730.6
C003000	SE_00321	chr19	30166767	30168495	1728	160.7
C003001	SE_00321	chr19	30172393	30173813	1420	124.21
C003002	SE_00321	chr19	30177228	30179186	1958	576.74
C003003	SE_00321	chr19	30183380	30184992	1612	141.73
C003004	SE_00321	chr19	30185655	30186554	899	90.37
C003005	SE_00321	chr19	30187639	30189534	1895	267.25
C003006	SE_00321	chr19	30190323	30192136	1813	323.03
C003007	SE_00321	chr19	30192213	30194615	2402	348.29
C003008	SE_00321	chr19	30194896	30207801	12905	3100