Super Enhancer Details

General details

Super-Enhancer ID:	SE_00323
Genomic locus:	chr9:139404221-139463290
Size/Length:	59069 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_017617
Gene Symbol:	NOTCH1
Chromosome:	chr9
TSS:	139388895 (Transcription start site)
TES:	139440238 (Transcription end site)
Strand:	-
Number of Exons:	34
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:139404221-139463290
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00323

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006121	SE_00323	chr9	139404221	139407911	3690	1255.76
C006122	SE_00323	chr9	139418153	139429355	11202	2181.55
C006123	SE_00323	chr9	139431145	139440359	9214	3100
C006124	SE_00323	chr9	139440497	139442681	2184	1091.4
C006125	SE_00323	chr9	139444948	139447867	2919	1120.2
C006126	SE_00323	chr9	139451510	139452319	809	93.72
C006127	SE_00323	chr9	139452549	139453826	1277	362.01
C006128	SE_00323	chr9	139457382	139461772	4390	2805.47
C006129	SE_00323	chr9	139462004	139463290	1286	334.36