Super Enhancer Details

General details

Super-Enhancer ID:	SE_00325
Genomic locus:	chr11:123023292-123067400
Size/Length:	44108 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_024769
Gene Symbol:	CLMP
Chromosome:	chr11
TSS:	122943032 (Transcription start site)
TES:	123066007 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00325

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001493	SE_00325	chr11	123023292	123024503	1211	116.79
C001494	SE_00325	chr11	123028439	123030763	2324	316.27
C001495	SE_00325	chr11	123034845	123048661	13816	3100
C001496	SE_00325	chr11	123048662	123067400	18738	3100