Super Enhancer Details

General details

Super-Enhancer ID:	SE_00327
Genomic locus:	chr16:85584430-85610135
Size/Length:	25705 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001134473
Gene Symbol:	GSE1
Chromosome:	chr16
TSS:	85646841 (Transcription start site)
TES:	85709812 (Transcription end site)
Strand:	+
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr16:85584430-85610135
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00327

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002564	SE_00327	chr16	85584430	85585888	1458	164.27
C002565	SE_00327	chr16	85586217	85600987	14770	3100
C002566	SE_00327	chr16	85601218	85606289	5071	2114.17
C002567	SE_00327	chr16	85606380	85610135	3755	2203.49