Super Enhancer Details

General details

Super-Enhancer ID:	SE_00329
Genomic locus:	chr8:103764759-103823497
Size/Length:	58738 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_148174
Gene Symbol:	AZIN1
Chromosome:	chr8
TSS:	103838529 (Transcription start site)
TES:	103876428 (Transcription end site)
Strand:	-
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr8:103764759-103823497
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00329

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005777	SE_00329	chr8	103764759	103766993	2234	326.61
C005778	SE_00329	chr8	103773566	103775512	1946	115.94
C005779	SE_00329	chr8	103779318	103783953	4635	822.2
C005780	SE_00329	chr8	103788173	103789467	1294	143.62
C005781	SE_00329	chr8	103793238	103795908	2670	541.38
C005782	SE_00329	chr8	103798644	103804555	5911	3100
C005783	SE_00329	chr8	103806877	103808154	1277	199.75
C005784	SE_00329	chr8	103816316	103823497	7181	3100