Super Enhancer Details

General details

Super-Enhancer ID:	SE_00332
Genomic locus:	chr11:65042227-65090445
Size/Length:	48218 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_006779
Gene Symbol:	CDC42EP2
Chromosome:	chr11
TSS:	65082288 (Transcription start site)
TES:	65089900 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00332

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001271	SE_00332	chr11	65042227	65044271	2044	529.51
C001272	SE_00332	chr11	65045982	65048650	2668	466.91
C001273	SE_00332	chr11	65055818	65060833	5015	3100
C001274	SE_00332	chr11	65063191	65070540	7349	3100
C001275	SE_00332	chr11	65074480	65077209	2729	2794.31
C001276	SE_00332	chr11	65077248	65079904	2656	1312.57
C001277	SE_00332	chr11	65080529	65086023	5494	3100
C001278	SE_00332	chr11	65088784	65090445	1661	174.03