Super Enhancer Details

General details

Super-Enhancer ID:	SE_00337
Genomic locus:	chr1:156425798-156479324
Size/Length:	53526 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005920
Gene Symbol:	MEF2D
Chromosome:	chr1
TSS:	156433512 (Transcription start site)
TES:	156460391 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00337

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000485	SE_00337	chr1	156425798	156428449	2651	1970.69
C000486	SE_00337	chr1	156434095	156436581	2486	302.77
C000487	SE_00337	chr1	156441142	156442331	1189	170.04
C000488	SE_00337	chr1	156444923	156448612	3689	1482.08
C000489	SE_00337	chr1	156457065	156458145	1080	128.65
C000490	SE_00337	chr1	156458785	156462158	3373	976.59
C000491	SE_00337	chr1	156462527	156464314	1787	167.04
C000492	SE_00337	chr1	156465189	156476309	11120	3100
C000493	SE_00337	chr1	156477669	156479324	1655	181.14