Super Enhancer Details

General details

Super-Enhancer ID:	SE_00338
Genomic locus:	chr5:95049462-95124047
Size/Length:	74585 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_014899
Gene Symbol:	RHOBTB3
Chromosome:	chr5
TSS:	95066849 (Transcription start site)
TES:	95132071 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:95049462-95124047
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00338

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004787	SE_00338	chr5	95049462	95050925	1463	237.32
C004788	SE_00338	chr5	95055403	95057882	2479	546.61
C004789	SE_00338	chr5	95061000	95064413	3413	608.17
C004790	SE_00338	chr5	95065201	95073671	8470	3100
C004791	SE_00338	chr5	95074056	95075562	1506	139.37
C004792	SE_00338	chr5	95079319	95080701	1382	140.42
C004793	SE_00338	chr5	95082806	95083962	1156	115.61
C004794	SE_00338	chr5	95086176	95087205	1029	100.16
C004795	SE_00338	chr5	95089431	95090988	1557	237.96
C004796	SE_00338	chr5	95093908	95099280	5372	1307.85
C004797	SE_00338	chr5	95106532	95107984	1452	145.63
C004798	SE_00338	chr5	95108502	95110681	2179	366.29
C004799	SE_00338	chr5	95112232	95118598	6366	2149.42
C004800	SE_00338	chr5	95119155	95124047	4892	716.83