Super Enhancer Details

General details

Super-Enhancer ID:	SE_00339
Genomic locus:	chr20:48289904-48344905
Size/Length:	55001 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004776
Gene Symbol:	B4GALT5
Chromosome:	chr20
TSS:	48249482 (Transcription start site)
TES:	48330421 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00339

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003701	SE_00339	chr20	48289904	48299484	9580	3100
C003702	SE_00339	chr20	48300763	48305646	4883	763.1
C003703	SE_00339	chr20	48307061	48309001	1940	173.76
C003704	SE_00339	chr20	48309984	48314473	4489	588.76
C003705	SE_00339	chr20	48314970	48319953	4983	1030.06
C003706	SE_00339	chr20	48321181	48324415	3234	1162.87
C003707	SE_00339	chr20	48324923	48331523	6600	3100
C003708	SE_00339	chr20	48340405	48342701	2296	378.61
C003709	SE_00339	chr20	48343580	48344905	1325	173.45