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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00340
Genomic locus: chr3:152065965-152166290
Size/Length: 100325 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_207294
Gene Symbol: MBNL1
Chromosome: chr3
TSS: 152017193 (Transcription start site)
TES: 152183569 (Transcription end site)
Strand: +
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr3:152065965-152166290
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00340

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004364 SE_00340 chr3 152065965 152071815 5850 297.02
C004365 SE_00340 chr3 152072254 152078655 6401 1416.42
C004366 SE_00340 chr3 152082764 152084770 2006 253.03
C004367 SE_00340 chr3 152091650 152096263 4613 1502.88
C004368 SE_00340 chr3 152096891 152104718 7827 2286.17
C004369 SE_00340 chr3 152109652 152112802 3150 368.37
C004370 SE_00340 chr3 152115654 152119996 4342 636.4
C004371 SE_00340 chr3 152120615 152122119 1504 116.51
C004372 SE_00340 chr3 152122169 152125905 3736 2014.06
C004373 SE_00340 chr3 152133653 152135861 2208 172.77
C004374 SE_00340 chr3 152143982 152146530 2548 257.36
C004375 SE_00340 chr3 152147707 152150216 2509 118.5
C004376 SE_00340 chr3 152153370 152155815 2445 500.46
C004377 SE_00340 chr3 152159833 152163078 3245 421.82
C004378 SE_00340 chr3 152164740 152166290 1550 123.86