Super Enhancer Details

General details

Super-Enhancer ID:	SE_00341
Genomic locus:	chr1:201417206-201482261
Size/Length:	65055 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_012396
Gene Symbol:	PHLDA3
Chromosome:	chr1
TSS:	201433411 (Transcription start site)
TES:	201438299 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00341

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000566	SE_00341	chr1	201417206	201418812	1606	286.61
C000567	SE_00341	chr1	201418889	201420649	1760	215.28
C000568	SE_00341	chr1	201424169	201428031	3862	3182.7
C000569	SE_00341	chr1	201428725	201440137	11412	3100
C000570	SE_00341	chr1	201440248	201441659	1411	119.09
C000571	SE_00341	chr1	201448404	201450508	2104	271.53
C000572	SE_00341	chr1	201458403	201459656	1253	98.44
C000573	SE_00341	chr1	201460662	201462466	1804	159.23
C000574	SE_00341	chr1	201464039	201466284	2245	244.79
C000575	SE_00341	chr1	201469012	201477260	8248	1567.37
C000576	SE_00341	chr1	201480117	201482261	2144	343.86