Super Enhancer Details

General details

Super-Enhancer ID:	SE_00343
Genomic locus:	chr14:52313012-52390602
Size/Length:	77590 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_053064
Gene Symbol:	GNG2
Chromosome:	chr14
TSS:	52327021 (Transcription start site)
TES:	52436518 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00343

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001952	SE_00343	chr14	52313012	52315704	2692	307.75
C001953	SE_00343	chr14	52318521	52323530	5009	1988.77
C001954	SE_00343	chr14	52325831	52331127	5296	2603.84
C001955	SE_00343	chr14	52338514	52341265	2751	892.7
C001956	SE_00343	chr14	52347195	52349315	2120	274.32
C001957	SE_00343	chr14	52360669	52366224	5555	966.49
C001958	SE_00343	chr14	52369791	52375499	5708	2895.54
C001959	SE_00343	chr14	52380717	52386136	5419	3068.05
C001960	SE_00343	chr14	52388456	52390602	2146	367.1