Super Enhancer Details

General details

Super-Enhancer ID:	SE_00349
Genomic locus:	chr18:9100873-9149782
Size/Length:	48909 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001083625
Gene Symbol:	ANKRD12
Chromosome:	chr18
TSS:	9137560 (Transcription start site)
TES:	9285983 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00349

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002810	SE_00349	chr18	9100873	9108285	7412	3100
C002811	SE_00349	chr18	9108620	9111315	2695	625.5
C002812	SE_00349	chr18	9115861	9120474	4613	1316.21
C002813	SE_00349	chr18	9121652	9122768	1116	98.52
C002814	SE_00349	chr18	9129453	9132217	2764	395.95
C002815	SE_00349	chr18	9132668	9143791	11123	3100
C002816	SE_00349	chr18	9144964	9149782	4818	1056.61