Super Enhancer Details

General details

Super-Enhancer ID:	SE_00350
Genomic locus:	chr2:20226894-20274912
Size/Length:	48018 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_014713
Gene Symbol:	LAPTM4A
Chromosome:	chr2
TSS:	20232410 (Transcription start site)
TES:	20251789 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00350

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003111	SE_00350	chr2	20226894	20228292	1398	164.18
C003112	SE_00350	chr2	20234871	20236506	1635	135.23
C003113	SE_00350	chr2	20241082	20242991	1909	355.82
C003114	SE_00350	chr2	20243496	20245473	1977	135.96
C003115	SE_00350	chr2	20247210	20253454	6244	3100
C003116	SE_00350	chr2	20261041	20268857	7816	1894.43
C003117	SE_00350	chr2	20269948	20274912	4964	3100