Super Enhancer Details

General details

Super-Enhancer ID:	SE_00351
Genomic locus:	chr3:128888780-128977694
Size/Length:	88914 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001127196
Gene Symbol:	CNBP
Chromosome:	chr3
TSS:	128886657 (Transcription start site)
TES:	128902810 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00351

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004304	SE_00351	chr3	128888780	128889934	1154	100.9
C004305	SE_00351	chr3	128891020	128893481	2461	152.61
C004306	SE_00351	chr3	128894140	128905924	11784	3100
C004307	SE_00351	chr3	128905993	128907663	1670	233.53
C004308	SE_00351	chr3	128914102	128916853	2751	670.2
C004309	SE_00351	chr3	128925861	128926859	998	230.23
C004310	SE_00351	chr3	128929799	128931356	1557	199.39
C004311	SE_00351	chr3	128942710	128948804	6094	1826.38
C004312	SE_00351	chr3	128957449	128958656	1207	96.78
C004313	SE_00351	chr3	128963627	128965249	1622	335.01
C004314	SE_00351	chr3	128967382	128970010	2628	1309.11
C004315	SE_00351	chr3	128970571	128974308	3737	780.39
C004316	SE_00351	chr3	128975460	128977694	2234	364.71