Super Enhancer Details

General details

Super-Enhancer ID:	SE_00353
Genomic locus:	chr19:6054967-6110627
Size/Length:	55660 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_007320
Gene Symbol:	RANBP3
Chromosome:	chr19
TSS:	5916151 (Transcription start site)
TES:	5978320 (Transcription end site)
Strand:	-
Number of Exons:	17
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:6054967-6110627
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00353

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002942	SE_00353	chr19	6054967	6063609	8642	3100
C002943	SE_00353	chr19	6065551	6068885	3334	2033.34
C002944	SE_00353	chr19	6070258	6072676	2418	418.13
C002945	SE_00353	chr19	6075998	6077726	1728	274.4
C002946	SE_00353	chr19	6086422	6089418	2996	1206.77
C002947	SE_00353	chr19	6091084	6094694	3610	1361.97
C002948	SE_00353	chr19	6097334	6101171	3837	3100
C002949	SE_00353	chr19	6102205	6106232	4027	1371.98
C002950	SE_00353	chr19	6107812	6110627	2815	815