Super Enhancer Details

General details

Super-Enhancer ID:	SE_00354
Genomic locus:	chr17:75092282-75162618
Size/Length:	70336 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_003013
Gene Symbol:	SCARNA16
Chromosome:	chr17
TSS:	75085388 (Transcription start site)
TES:	75085575 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00354

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002751	SE_00354	chr17	75092282	75096212	3930	2040.52
C002752	SE_00354	chr17	75103628	75106951	3323	389.31
C002753	SE_00354	chr17	75112082	75118732	6650	1317.61
C002754	SE_00354	chr17	75119140	75130285	11145	2012.36
C002755	SE_00354	chr17	75130492	75131980	1488	135.73
C002756	SE_00354	chr17	75131997	75134264	2267	180.27
C002757	SE_00354	chr17	75135253	75151805	16552	590.29
C002758	SE_00354	chr17	75157491	75162618	5127	180.46