Super Enhancer Details

General details

Super-Enhancer ID:	SE_00357
Genomic locus:	chr12:120662047-120704024
Size/Length:	41977 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_025157
Gene Symbol:	PXN
Chromosome:	chr12
TSS:	120648241 (Transcription start site)
TES:	120703574 (Transcription end site)
Strand:	-
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:120662047-120704024
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00357

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001789	SE_00357	chr12	120662047	120664821	2774	501.08
C001790	SE_00357	chr12	120665596	120674461	8865	3100
C001791	SE_00357	chr12	120674790	120677257	2467	1019.28
C001792	SE_00357	chr12	120677593	120682306	4713	1409.97
C001793	SE_00357	chr12	120682425	120683575	1150	90.31
C001794	SE_00357	chr12	120684667	120690964	6297	3100
C001795	SE_00357	chr12	120691658	120698516	6858	1977.35
C001796	SE_00357	chr12	120699026	120704024	4998	3100