Super Enhancer Details

General details

Super-Enhancer ID:	SE_00358
Genomic locus:	chr19:40734674-40793531
Size/Length:	58857 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_030371
Gene Symbol:	MIR641
Chromosome:	chr19
TSS:	40788449 (Transcription start site)
TES:	40788548 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:40734674-40793531
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00358

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003024	SE_00358	chr19	40734674	40736548	1874	168.26
C003025	SE_00358	chr19	40736957	40738885	1928	548.03
C003026	SE_00358	chr19	40747042	40749973	2931	681.1
C003027	SE_00358	chr19	40750060	40756661	6601	3181.33
C003028	SE_00358	chr19	40757662	40760182	2520	202.7
C003029	SE_00358	chr19	40760505	40764249	3744	819.42
C003030	SE_00358	chr19	40767340	40769716	2376	351.84
C003031	SE_00358	chr19	40770983	40777061	6078	1350.99
C003032	SE_00358	chr19	40777161	40779169	2008	116.69
C003033	SE_00358	chr19	40779265	40781482	2217	302.23
C003034	SE_00358	chr19	40782852	40793531	10679	3100