Super Enhancer Details

General details

Super-Enhancer ID:	SE_00359
Genomic locus:	chr14:69388819-69450692
Size/Length:	61873 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001130005
Gene Symbol:	ACTN1
Chromosome:	chr14
TSS:	69340839 (Transcription start site)
TES:	69446083 (Transcription end site)
Strand:	-
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00359

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002056	SE_00359	chr14	69388819	69393607	4788	1814.75
C002057	SE_00359	chr14	69403261	69409060	5799	2194.99
C002058	SE_00359	chr14	69409968	69411518	1550	129.63
C002059	SE_00359	chr14	69414459	69420814	6355	3100
C002060	SE_00359	chr14	69421252	69427094	5842	1258.6
C002061	SE_00359	chr14	69429503	69432621	3118	486.94
C002062	SE_00359	chr14	69432637	69434133	1496	166.49
C002063	SE_00359	chr14	69435385	69437993	2608	428.37
C002064	SE_00359	chr14	69441595	69450692	9097	795.72