Super Enhancer Details

General details

Super-Enhancer ID:	SE_00360
Genomic locus:	chr12:32673460-32731697
Size/Length:	58237 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_139241
Gene Symbol:	FGD4
Chromosome:	chr12
TSS:	32654976 (Transcription start site)
TES:	32798984 (Transcription end site)
Strand:	+
Number of Exons:	17
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00360

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001595	SE_00360	chr12	32673460	32677070	3610	876.88
C001596	SE_00360	chr12	32684990	32691485	6495	3080.17
C001597	SE_00360	chr12	32692573	32696779	4206	2759.69
C001598	SE_00360	chr12	32697993	32699773	1780	194.92
C001599	SE_00360	chr12	32700474	32705201	4727	2065.76
C001600	SE_00360	chr12	32710407	32715860	5453	1768.82
C001601	SE_00360	chr12	32717012	32723241	6229	1594.57
C001602	SE_00360	chr12	32727138	32728463	1325	116.4
C001603	SE_00360	chr12	32729016	32731697	2681	358.88