Super Enhancer Details

General details

Super-Enhancer ID:	SE_00361
Genomic locus:	chr1:19739675-19833107
Size/Length:	93432 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004930
Gene Symbol:	CAPZB
Chromosome:	chr1
TSS:	19665266 (Transcription start site)
TES:	19812135 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:19739675-19833107
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00361

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000068	SE_00361	chr1	19739675	19741018	1343	103.23
C000069	SE_00361	chr1	19746887	19757387	10500	3055.34
C000070	SE_00361	chr1	19758908	19766393	7485	1937
C000071	SE_00361	chr1	19771808	19773377	1569	218.67
C000072	SE_00361	chr1	19773803	19779686	5883	1769.24
C000073	SE_00361	chr1	19779782	19782412	2630	232.53
C000074	SE_00361	chr1	19789558	19790542	984	94.12
C000075	SE_00361	chr1	19790977	19793327	2350	393.72
C000076	SE_00361	chr1	19794228	19797463	3235	815.2
C000077	SE_00361	chr1	19802985	19804456	1471	125.31
C000078	SE_00361	chr1	19809437	19814097	4660	1974.16
C000079	SE_00361	chr1	19820425	19823031	2606	522.62
C000080	SE_00361	chr1	19830861	19833107	2246	479.31