Super Enhancer Details

General details

Super-Enhancer ID:	SE_00363
Genomic locus:	chr5:150552880-150615380
Size/Length:	62500 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_015621
Gene Symbol:	CCDC69
Chromosome:	chr5
TSS:	150560612 (Transcription start site)
TES:	150603654 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00363

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004925	SE_00363	chr5	150552880	150554405	1525	275.27
C004926	SE_00363	chr5	150559787	150563691	3904	968.56
C004927	SE_00363	chr5	150570412	150571533	1121	104.13
C004928	SE_00363	chr5	150572567	150578437	5870	1867.17
C004929	SE_00363	chr5	150586883	150604527	17644	1432.38
C004930	SE_00363	chr5	150609255	150610244	989	93.2
C004931	SE_00363	chr5	150613669	150615380	1711	175.38