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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00370
Genomic locus: chr10:30710768-30754299
Size/Length: 43531 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_005204
Gene Symbol: MAP3K8
Chromosome: chr10
TSS: 30722949 (Transcription start site)
TES: 30750762 (Transcription end site)
Strand: +
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00370

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000814 SE_00370 chr10 30710768 30713182 2414 431.71
C000815 SE_00370 chr10 30719669 30721367 1698 357.39
C000816 SE_00370 chr10 30721383 30729537 8154 3100
C000817 SE_00370 chr10 30730069 30732966 2897 176.69
C000818 SE_00370 chr10 30733382 30735681 2299 260.76
C000819 SE_00370 chr10 30737395 30738443 1048 119.12
C000820 SE_00370 chr10 30739773 30740958 1185 91.2
C000821 SE_00370 chr10 30741325 30746107 4782 3100
C000822 SE_00370 chr10 30749495 30751030 1535 163.59
C000823 SE_00370 chr10 30751239 30752317 1078 95.17
C000824 SE_00370 chr10 30752828 30754299 1471 137.43