Super Enhancer Details

General details

Super-Enhancer ID:	SE_00370
Genomic locus:	chr10:30710768-30754299
Size/Length:	43531 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005204
Gene Symbol:	MAP3K8
Chromosome:	chr10
TSS:	30722949 (Transcription start site)
TES:	30750762 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00370

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000814	SE_00370	chr10	30710768	30713182	2414	431.71
C000815	SE_00370	chr10	30719669	30721367	1698	357.39
C000816	SE_00370	chr10	30721383	30729537	8154	3100
C000817	SE_00370	chr10	30730069	30732966	2897	176.69
C000818	SE_00370	chr10	30733382	30735681	2299	260.76
C000819	SE_00370	chr10	30737395	30738443	1048	119.12
C000820	SE_00370	chr10	30739773	30740958	1185	91.2
C000821	SE_00370	chr10	30741325	30746107	4782	3100
C000822	SE_00370	chr10	30749495	30751030	1535	163.59
C000823	SE_00370	chr10	30751239	30752317	1078	95.17
C000824	SE_00370	chr10	30752828	30754299	1471	137.43