Super Enhancer Details

General details

Super-Enhancer ID:	SE_00376
Genomic locus:	chr10:73722231-73771261
Size/Length:	49030 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004273
Gene Symbol:	CHST3
Chromosome:	chr10
TSS:	73724119 (Transcription start site)
TES:	73773322 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:73722231-73771261
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00376

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000891	SE_00376	chr10	73722231	73726705	4474	3100
C000892	SE_00376	chr10	73730462	73732061	1599	257.73
C000893	SE_00376	chr10	73733343	73737385	4042	2905.7
C000894	SE_00376	chr10	73740016	73742120	2104	354.19
C000895	SE_00376	chr10	73742891	73748210	5319	3100
C000896	SE_00376	chr10	73757919	73759897	1978	284.51
C000897	SE_00376	chr10	73766395	73767701	1306	162.14
C000898	SE_00376	chr10	73767964	73771261	3297	2811.45