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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00383
Genomic locus: chr2:42136123-42171456
Size/Length: 35333 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_019063
Gene Symbol: EML4
Chromosome: chr2
TSS: 42396477 (Transcription start site)
TES: 42559688 (Transcription end site)
Strand: +
Number of Exons: 22
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr2:42136123-42171456
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00383

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003167 SE_00383 chr2 42136123 42137672 1549 166.72
C003168 SE_00383 chr2 42138082 42143253 5171 3100
C003169 SE_00383 chr2 42148121 42166507 18386 3100
C003170 SE_00383 chr2 42167480 42169028 1548 180.26
C003171 SE_00383 chr2 42169985 42171456 1471 162.79