Super Enhancer Details

General details

Super-Enhancer ID:	SE_00384
Genomic locus:	chr15:86085869-86169999
Size/Length:	84130 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_031682
Gene Symbol:	MIR1276
Chromosome:	chr15
TSS:	86313726 (Transcription start site)
TES:	86313809 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00384

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002403	SE_00384	chr15	86085869	86089843	3974	1174.02
C002404	SE_00384	chr15	86090240	86091350	1110	111.88
C002405	SE_00384	chr15	86101136	86103048	1912	160.81
C002406	SE_00384	chr15	86107610	86109240	1630	91.23
C002407	SE_00384	chr15	86121539	86129059	7520	3100
C002408	SE_00384	chr15	86130802	86134883	4081	2695.04
C002409	SE_00384	chr15	86140795	86144050	3255	434.15
C002410	SE_00384	chr15	86149612	86152555	2943	856.68
C002411	SE_00384	chr15	86158515	86169999	11484	3100