Super Enhancer Details

General details

Super-Enhancer ID:	SE_00386
Genomic locus:	chr3:43731767-43815704
Size/Length:	83937 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_016006
Gene Symbol:	ABHD5
Chromosome:	chr3
TSS:	43732374 (Transcription start site)
TES:	43764217 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:43731767-43815704
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00386

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004093	SE_00386	chr3	43731767	43739368	7601	3100
C004094	SE_00386	chr3	43750141	43751664	1523	257.99
C004095	SE_00386	chr3	43760043	43762514	2471	247.89
C004096	SE_00386	chr3	43763670	43765560	1890	187.57
C004097	SE_00386	chr3	43774092	43776509	2417	456.14
C004098	SE_00386	chr3	43783577	43787163	3586	1197.49
C004099	SE_00386	chr3	43788714	43790312	1598	246.41
C004100	SE_00386	chr3	43799577	43801968	2391	308.18
C004101	SE_00386	chr3	43806260	43815704	9444	3100