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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00391
Genomic locus: chr10:75756955-75822012
Size/Length: 65057 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_003373
Gene Symbol: VCL
Chromosome: chr10
TSS: 75757871 (Transcription start site)
TES: 75879914 (Transcription end site)
Strand: +
Number of Exons: 22
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00391

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000899 SE_00391 chr10 75756955 75762072 5117 3100
C000900 SE_00391 chr10 75765790 75766733 943 131.85
C000901 SE_00391 chr10 75767587 75769364 1777 416.4
C000902 SE_00391 chr10 75770140 75774099 3959 1467.9
C000903 SE_00391 chr10 75775396 75776882 1486 101.01
C000904 SE_00391 chr10 75776990 75779040 2050 432.15
C000905 SE_00391 chr10 75779970 75784418 4448 1087
C000906 SE_00391 chr10 75785955 75787519 1564 185.03
C000907 SE_00391 chr10 75788880 75790834 1954 115.65
C000908 SE_00391 chr10 75792351 75796089 3738 819.23
C000909 SE_00391 chr10 75796846 75798012 1166 111.88
C000910 SE_00391 chr10 75798956 75801434 2478 1485.91
C000911 SE_00391 chr10 75801600 75803169 1569 92.66
C000912 SE_00391 chr10 75806301 75812316 6015 1346.1
C000913 SE_00391 chr10 75813713 75814780 1067 165.11
C000914 SE_00391 chr10 75815117 75816734 1617 126.97
C000915 SE_00391 chr10 75820787 75822012 1225 115.27