Super Enhancer Details

General details

Super-Enhancer ID:	SE_00392
Genomic locus:	chr1:56961524-57046559
Size/Length:	85035 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003713
Gene Symbol:	PPAP2B
Chromosome:	chr1
TSS:	56960418 (Transcription start site)
TES:	57045257 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00392

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000187	SE_00392	chr1	56961524	56964118	2594	210.09
C000188	SE_00392	chr1	56966756	56969034	2278	311.08
C000189	SE_00392	chr1	56971372	56975584	4212	930.8
C000190	SE_00392	chr1	56978343	56979769	1426	117.62
C000191	SE_00392	chr1	56979893	56984236	4343	792.9
C000192	SE_00392	chr1	56987091	56989290	2199	268.93
C000193	SE_00392	chr1	56990400	56995807	5407	464.11
C000194	SE_00392	chr1	57005235	57007221	1986	173.44
C000195	SE_00392	chr1	57012363	57017426	5063	1557.8
C000196	SE_00392	chr1	57027740	57032645	4905	799.26
C000197	SE_00392	chr1	57037850	57046559	8709	3100