Super Enhancer Details

General details

Super-Enhancer ID:	SE_00393
Genomic locus:	chr10:32594606-32679613
Size/Length:	85007 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_025209
Gene Symbol:	EPC1
Chromosome:	chr10
TSS:	32556643 (Transcription start site)
TES:	32667726 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00393

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000825	SE_00393	chr10	32594606	32597158	2552	298.85
C000826	SE_00393	chr10	32603154	32609075	5921	1052.32
C000827	SE_00393	chr10	32613793	32623451	9658	1314.62
C000828	SE_00393	chr10	32625479	32627439	1960	112.5
C000829	SE_00393	chr10	32629389	32640609	11220	3100
C000830	SE_00393	chr10	32652004	32653090	1086	111.35
C000831	SE_00393	chr10	32656194	32658206	2012	316.2
C000832	SE_00393	chr10	32660505	32662009	1504	98.6
C000833	SE_00393	chr10	32664989	32669305	4316	1420.05
C000834	SE_00393	chr10	32676970	32679613	2643	475.36