Super Enhancer Details

General details

Super-Enhancer ID:	SE_00396
Genomic locus:	chr6:43736316-43775755
Size/Length:	39439 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001171629
Gene Symbol:	VEGFA
Chromosome:	chr6
TSS:	43737945 (Transcription start site)
TES:	43754223 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00396

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005112	SE_00396	chr6	43736316	43745488	9172	3100
C005113	SE_00396	chr6	43745981	43747585	1604	193.66
C005114	SE_00396	chr6	43749294	43752521	3227	471.68
C005115	SE_00396	chr6	43754129	43762861	8732	3100
C005116	SE_00396	chr6	43764064	43765602	1538	181.43
C005117	SE_00396	chr6	43766034	43772289	6255	1754.01
C005118	SE_00396	chr6	43773886	43775755	1869	208.47