Super Enhancer Details

General details

Super-Enhancer ID:	SE_00397
Genomic locus:	chr1:153697735-153778834
Size/Length:	81099 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_024330
Gene Symbol:	SLC27A3
Chromosome:	chr1
TSS:	153747767 (Transcription start site)
TES:	153752633 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00397

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000456	SE_00397	chr1	153697735	153699229	1494	186.71
C000457	SE_00397	chr1	153699365	153704316	4951	3100
C000458	SE_00397	chr1	153706007	153707927	1920	423.16
C000459	SE_00397	chr1	153714555	153716168	1613	111.2
C000460	SE_00397	chr1	153719652	153726109	6457	1386.12
C000461	SE_00397	chr1	153734219	153737766	3547	290.87
C000462	SE_00397	chr1	153741293	153750753	9460	3100
C000463	SE_00397	chr1	153751748	153753826	2078	380.9
C000464	SE_00397	chr1	153755072	153756848	1776	1447.86
C000465	SE_00397	chr1	153761403	153764281	2878	1992.52
C000466	SE_00397	chr1	153774959	153777499	2540	302.98
C000467	SE_00397	chr1	153777576	153778834	1258	182.12